Description
- Assembly Name: GU_Smar_1.1.8
- Assembly Type: Haploid
- Assembly Level: Contig
- Genome Representation: Full
- Accession: GCA_030871285.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 54.79 |
| GC % | 45.26 |
| Contig # | 83 |
| Contig N50 (Mbp) | 1.24 |
| Contig L50 | 17 |
| Contig N90 (Mbp) | 0.32 |
| Contig L90 | 48 |
| Scaffold # | 83 |
| Scaffold N50 (Mbp) | 1.24 |
| Scaffold L50 | 17 |
| Scaffold N90 (Mbp) | 0.32 |
| Scaffold L90 | 48 |
| Scaffolds >= 10 kb | 80 |
| BUSCO % (stramenopiles_odb10) | C:97.0 [S:93.0, D:4.0], F:0.0, M:3.0, n:100 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 17265 |
| Transcript # | 17265 |
| Avg exons per transcript | 1.9 |
| Avg gene length (bp) | 1851 |
| Avg transcript length (bp) | 1851 |
| Avg exon length (bp) | 861 |
| Avg intron length (bp) | 204 |
Notes: Assembly statistics and BUSCO percentages were calculated for the primary genome assembly GCA_030871285.1. Annotation statistics were calculated using GCA_030871285.1_GU_Smar_1.1.8_genomic.gff.
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: stramenopiles_odb10). See also the official BUSCO manual.
Publication(s)
There is currently no publication associated with the genome of S. marinoi R05AC. In the meantime, please cite the genome assembly submission: GCA_030871285.1. A list of the submitting authors can be found at the JATAAI000000000.1 record at NCBI.
Page last updated: 22/10/2024