Data availability
The table below lists the data files currently displayed on the Genome Portal. In the Links column, you can find action buttons to download the data file, go to the website of the source repository from where the data was fetched, and (if applicable) the associated scientific article(s) to the data. You can use the toggle on the top right of the table to switch between the default and the expanded table view.
| Data track name | Description | Links | Accession/DOI | File name | Principal investigator | Principal investigator affiliation | First date on portal |
|---|---|---|---|---|---|---|---|
| Genome | Reference genome sequence | GCA_900323705.1 | CAVLGL01.fasta.gz | Jacob Höglund and Niclas Backström | Uppsala University | 15 October 2024 | |
| Protein-coding genes | Functional annotation of protein-coding genes in the primary genome assembly | 10.17044/scilifelab.25908748.v2 | pmne_functional_edit1.gff.gz | Jacob Höglund and Niclas Backström | Uppsala University | 15 October 2024 | |
| Transcripts | Illumina RNAseq transcript assembly (thorax muscle tissue) | 10.17044/scilifelab.25908748.v2 | pmne_Illumina_RNAseq_StringTie_sorted-transcripts_match.gff.gz | Jacob Höglund and Niclas Backström | Uppsala University | 15 October 2024 | |
| ncRNA genes | Non-coding RNA (ncRNA) genes | 10.17044/scilifelab.25908748.v2 | pmne_ncRNAs.gff.gz | Jacob Höglund and Niclas Backström | Uppsala University | 15 October 2024 | |
| tRNA genes | tRNA genes and putative pseudogenes | 10.17044/scilifelab.25908748.v2 | pmne_tRNAs_and_pseudogenes.gff.gz | Jacob Höglund and Niclas Backströmn | Uppsala University | 15 October 2024 | |
| Mitochondrial genome | Mitochondrial genome sequence | OZ075093.1 | OZ075093.1.fasta.gz | Jacob Höglund and Niclas Backström | Uppsala University | 15 October 2024 | |
| Mitochondrial genes | Annotation of protein coding genes in the mitochondrion | 10.17044/scilifelab.25908748.v2 | pmne_mtdna.gff.gz | Jacob Höglund and Niclas Backström | Uppsala University | 15 October 2024 |
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Article
Download the table contents as a JSON file.
Open (in a new tab) the refNameAlias text file used in JBrowse to set the aliases for reference sequence names (e.g., to define that "chr1" is an alias for "1").
Open the Glossary (in a new tab).
| Data track name | Description | Links | Principal investigator | Principal investigator affiliation |
|---|---|---|---|---|
| Genome | Reference genome sequence | Jacob Höglund and Niclas Backström | Uppsala University | |
| Protein-coding genes | Functional annotation of protein-coding genes in the primary genome assembly | Jacob Höglund and Niclas Backström | Uppsala University | |
| Transcripts | Illumina RNAseq transcript assembly (thorax muscle tissue) | Jacob Höglund and Niclas Backström | Uppsala University | |
| ncRNA genes | Non-coding RNA (ncRNA) genes | Jacob Höglund and Niclas Backström | Uppsala University | |
| tRNA genes | tRNA genes and putative pseudogenes | Jacob Höglund and Niclas Backströmn | Uppsala University | |
| Mitochondrial genome | Mitochondrial genome sequence | Jacob Höglund and Niclas Backström | Uppsala University | |
| Mitochondrial genes | Annotation of protein coding genes in the mitochondrion | Jacob Höglund and Niclas Backström | Uppsala University |
Page last updated: 22/10/2024