Description
- Assembly Name: Parnassius_mnemosyne_n_2023_11
- Assembly Type: Haploid
- Assembly Level: Scaffold
- Genome Representation: Full
- Accession: GCA_963668995.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 1494.39 |
| GC % | 38.04 |
| Contig # | 285 |
| Contig N50 (Mbp) | 23.93 |
| Contig L50 | 22 |
| Contig N90 (Mbp) | 4.73 |
| Contig L90 | 82 |
| Scaffold # | 169 |
| Scaffold N50 (Mbp) | 49.64 |
| Scaffold L50 | 13 |
| Scaffold N90 (Mbp) | 34.77 |
| Scaffold L90 | 27 |
| Scaffolds >= 10 kb | 168 |
| BUSCO % (lepidoptera_odb10) | C:99 [S:97.8, D:1.2], F:0.2, M:0.8, n:5286 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 22852 |
| Transcript # | 27376 |
| Average exons per transcript | 4.7 |
| Avg. gene length (bp) | 16898 |
| Avg. transcript length (bp) | 16026 |
| Avg. exon length (bp) | 343 |
| Avg. intron length (bp) | 3916 |
Notes: Assembly statistics and BUSCO percentages were calculated for the primary genome assembly GCA_963668995.1, which does not include the mitochondrial assembly (OZ075093.1). Annotation statistics were calculated using pmne_functional_edit1.gff.gz, which is the orignal version of the protein-coding genes annotation and was the version that was used for the submission to ENA.
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: lepidoptera_odb10). See also the official BUSCO manual.
Publication(s)
The data for Parnassius mnemosyne displayed in the genome portal comes from:
Höglund, J., Dias, G., Olsen, R. A., Soares, A., Bunikis, I., Talla, V., & Backström, N. (2024). A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern. Genome Biology and Evolution, 16(2), evae031. https://doi.org/10.1093/gbe/evae031Funding
The study in which the genome data was generated (Höglund et al. 2024) was funded by:
- Swedish Research Council (Grant number 2019-04791)
- NBIS/SciLifeLab long-term bioinformatics support
- Swedish Rescue Program for P. mnemosyne through the local administrative board (Länsstyrelsen) of Blekinge
Page last updated: 22/10/2024