Notes: Assembly statistics were calculated for the primary genome assembly GCA_907164705.1 (CAKOGL01.fasta.gz) using Quast (v5.2.0; Mikheenko et al. 2018). Busco statistics (Manni et al., 2021) were taken from Podsiadlowski et al. (2021). Annotation statistics were calculated using GCA_907164705.1_Parnassius_apollo_genomic.gff.gz using AGAT (v1.4.1; Dainat, 2024).

BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: arthropoda_odb10). See also the official BUSCO manual.

Publication(s)

The data for Parnassius apollo displayed in the genome portal comes from:

Copy Copied

Podsiadlowski, L., Tunström, K., Espeland, M., & Wheat, C. W. (2021). The Genome Assembly and Annotation of the Apollo Butterfly Parnassius apollo, a Flagship Species for Conservation Biology. Genome Biology and Evolution, 13(8), evab122. https://doi.org/10.1093/gbe/evab122

The tools used by the Genome Portal staff to calculate the statistics shown on top of this page are described in:

• Dainat J. (2024). AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format. (Version v1.4.1). Zenodo. https://www.doi.org/10.5281/zenodo.3552717

• Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199

• Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D., & Gurevich, A. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics, 34(13), i142–i150. https://doi.org/10.1093/bioinformatics/bty266

Funding

The study in which the genome data was generated (Podsiadlowski et al. 2021) acknowledge funding by:

• Swedish Environmental Protection Agency (Naturvårdsverket)
• The Swedish Research Council (Grant number 2017-04386)