Data availability
The table below lists the data files currently displayed on the Genome Portal. In the Links column, you can find action buttons to download the data file, go to the website of the source repository from where the data was fetched, and (if applicable) the associated scientific article(s) to the data. You can use the toggle on the top right of the table to switch between the default and the expanded table view.
| Data track name | Description | Links | Accession/DOI | File name | Principal investigator | Principal investigator affiliation | First date on portal |
|---|---|---|---|---|---|---|---|
| Genome | Reference genome sequence from ENA | GCA_964030455.1 | CAXKWB01.fasta.gz | Andreas Wallberg | Uppsala University | 15 October 2024 | |
| Protein-coding genes (research group's version, used on the Genome Portal) | Functional annotation of protein-coding genes with non-redundant isoforms. Missing stop-codons have been added if detected in the reference genome assembly | 10.17044/scilifelab.22786925.v1 | annotations.protein_coding_gene_models.non_redundant_added_stop_codons.gff | Andreas Wallberg | Uppsala University | 15 October 2024 | |
| Protein-coding genes (NCBI version, currently not displayed in the Genome Portal) | Functional annotation of protein-coding genes with non-redundant isoforms. Missing stop-codons have been added if detected in the reference genome assembly | GCA_964058975.1 | GCA_964058975.1_Mnor_HA_v2_genomic.gff.gz | Andreas Wallberg | Uppsala University | 31 October 2024 | |
| Genetic variation (currently not displayed in the Genome Portal) | VCF file with 760 million SNPs | PRJEB77093 | m_norvegica.variation.vcf.gz | Andreas Wallberg | Uppsala University | 5 November 2024 | |
| Other genomic resources (currently not displayed in the Genome Portal) | Reference genome sequence and annotations at the SciLifeLab Data Repository. These data and annotations include genes, transposable elements, DNA methylation, genetic variation data and other elements based on the original sequence names used in the article. | 10.17044/scilifelab.c.6626216 | Several different files, please see the linked website for more information | Andreas Wallberg | Uppsala University | 5 November 2024 |
Download
Website
Article
Download the table contents as a JSON file.
Open (in a new tab) the refNameAlias text file used in JBrowse to set the aliases for reference sequence names (e.g., to define that "chr1" is an alias for "1").
Open the Glossary (in a new tab).| Data track name | Description | Links | Principal investigator | Principal investigator affiliation |
|---|---|---|---|---|
| Genome | Reference genome sequence from ENA | Andreas Wallberg | Uppsala University | |
| Protein-coding genes (research group's version, used on the Genome Portal) | Functional annotation of protein-coding genes with non-redundant isoforms. Missing stop-codons have been added if detected in the reference genome assembly | Andreas Wallberg | Uppsala University | |
| Protein-coding genes (NCBI version, currently not displayed in the Genome Portal) | Functional annotation of protein-coding genes with non-redundant isoforms. Missing stop-codons have been added if detected in the reference genome assembly | Andreas Wallberg | Uppsala University | |
| Genetic variation (currently not displayed in the Genome Portal) | VCF file with 760 million SNPs | Andreas Wallberg | Uppsala University | |
| Other genomic resources (currently not displayed in the Genome Portal) | Reference genome sequence and annotations at the SciLifeLab Data Repository. These data and annotations include genes, transposable elements, DNA methylation, genetic variation data and other elements based on the original sequence names used in the article. | Andreas Wallberg | Uppsala University |
Page last updated: 05/11/2024