Description
- Assembly Name: Mnor_HA_v2
- Assembly Type: Haploid
- Assembly Level: Scaffold
- Genome Representation: Full
- Accession: GCA_964058975.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 19.73 |
| GC % | 29.92 |
| Contig # | 422377 |
| Contig N50 (Mbp) | 70524 |
| Contig L50 | 82325 |
| Contig N90 (Mbp) | 21391 |
| Contig L90 | 272177 |
| Scaffold # | 216567 |
| Scaffold N50 (Mbp) | 220856 |
| Scaffold L50 | 24545 |
| Scaffold N90 (Mbp) | 38152 |
| Scaffold L90 | 111071 |
| Scaffolds >= 10 kb | 192940 |
| BUSCO % (arthropoda_odb10) | C:99.7 [S:72, D:3.7], F:14, M:10, n:1013 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 42189 |
| Transcript # | 42189 |
| Avg exons per transcript | 5.7 |
| Avg gene length (bp) | 50276 |
| Avg transcript length (bp) | 50276 |
| Avg exon length (bp) | 282 |
| Avg intron length (bp) | 9804 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_964058975.1. Busco statistics were taken from Unneberg et al. (2024). Annotation statistics were calculated using GCA_964058975.1_Mnor_HA_v2_genomic.gff.
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: arthropoda_odb10). See also the official BUSCO manual.
Publication(s)
The Meganyctiphanes norvegica data displayed in the genome portal comes from:
-
Unneberg, P., Larsson, M., Olsson, A., Wallerman, O., Petri, A., Bunikis, I., Vinnere Pettersson, O., Papetti, C., Gislason, A., Glenner, H., Cartes, J. E., Blanco-Bercial, L., Eriksen, E., Meyer, B., & Wallberg, A. (2024). Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins. Nature Communications, 15(1), 6297. https://doi.org/10.1038/s41467-024-50239-7
Funding
The study in which the genome data was generated (Unneberg et al. 2024) was funded by:
-
Swedish Research Council Formas 2017-00413
-
U.S. National Science Foundation, Division Of Ocean Sciences (NSF OCE) grants 1316040 and 1948162
-
Knut and Alice Wallenberg Foundation as part of the National Bioinformatics Infrastructure Sweden at SciLifeLab, grant ID KAW 2017.0003.
Page last updated: 05/11/2024