Description
- Assembly Name: US_GU_Lsax_2.0
- Assembly Type: Haploid
- Assembly Level: Chromosome
- Genome Representation: Full
- Accession: GCA_037325665.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 1254.85 |
| GC % | 42.35 |
| Contig # | 10770 |
| Contig N50 (Mbp) | 0.27 |
| Contig L50 | 1289 |
| Contig N90 (Mbp) | 0.05 |
| Contig L90 | 5317 |
| Scaffold # | 4070 |
| Scaffold N50 (Mbp) | 67.52 |
| Scaffold L50 | 8 |
| Scaffold N90 (Mbp) | 44.90 |
| Scaffold L90 | 17 |
| Scaffolds >= 10 kb | 2924 |
| BUSCO % (mollusca_odb10), genome | C:79.2 [S:77.7, D:1.5], F:4.9, M:15.9, n:5295 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 25144 |
| Transcript # | 29761 |
| Avg exons per transcript | 7.2 |
| Avg gene length (bp) | 12995 |
| Avg transcript length (bp) | 14810 |
| Avg exon length (bp) | 218 |
| Avg intron length (bp) | 2145 |
| BUSCO % (mollusca_odb10), predicted proteins | C:82.2 [S:62.5, D:19.7], F:1.2, M:16.6, n:5295 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_037325665.1. Busco statistics were taken from Supplemental Table S1 in De Jode et al. (2024). Annotation statistics were calculated using GCA_037325665.1_US_GU_Lsax_2.0_genomic.gff.gz.
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: mollusca_odb10). See also the official BUSCO manual.
Publication(s)
The data for Littorina saxatilis displayed in the genome portal comes from:
-
De Jode, A., Faria, R., Formenti, G., Sims, Y., Smith, T. P., Tracey, A., Wood, J. M. D., Zagrodzka, Z. B., Johannesson, K., Butlin, R. K., & Leder, E. H. (2024). Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis. Genome Biology and Evolution, 16(4), evae076. https://doi.org/10.1093/gbe/evae076
Funding
The study in which the genome data was generated (De Jode et al. 2024) acknowledge funding by:
- The European Research Council (grant agreement number 693030),
- The Swedish Research Council VR (grant agreement numbers 2018-03695, 2020-05385, and 2021-04191)
- The European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie (grant agreement number 706376)
- The Fundação para a Ciência e a Tecnologia (2020.00275.CEECIND and PTDC/BIA-EVL/1614/2021)
Page last updated: 15/10/2024