Data availability
The table below lists the data files currently displayed on the Genome Portal. In the Links column, you can find action buttons to download the data file, go to the website of the source repository from where the data was fetched, and (if applicable) the associated scientific article(s) to the data. You can use the toggle on the top right of the table to switch between the default and the expanded table view.
| Data track name | Description | Links | Accession/DOI | File name | Principal investigator | Principal investigator affiliation | First date on portal |
|---|---|---|---|---|---|---|---|
| Genome | Reference genome sequence | GCA_964030455.1 | GCA_964030455.1_Ltrigynum_genome_genomic.fna.gz | Tanja Slotte | Stockholm University | 15 October 2024 | |
| Protein-coding genes | Functional annotation of protein-coding genes | 10.17044/scilifelab.24324382.v2 | Ltrigynum_v1_genes.gff.gz | Tanja Slotte | Stockholm University | 15 October 2024 | |
| Repeats | Annotation of the repetitive regions | 10.17044/scilifelab.24324382.v2 | L_trigynum_v1_rep.bed.gz | Tanja Slotte | Stockholm University | 15 October 2024 | |
| Tajima's D, population 01 | Whole genome Tajima's D estimates for individuals of population 01 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26937202.v2 | Ltri_pop01_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 03 | Whole genome Tajima's D estimates for individuals of population 03 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26937202.v2 | Ltri_pop03_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 04 | Whole genome Tajima's D estimates for individuals of population 04 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26937202.v2 | Ltri_pop04_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 06 | Whole genome Tajima's D estimates for individuals of population 06 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26937202.v2 | Ltri_pop06_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 07 | Whole genome Tajima's D estimates for individuals of population 07 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26937202.v2 | Ltri_pop07_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 08 | Whole genome Tajima's D estimates for individuals of population 08 of L. trigynum per 100 kb windows. (NOTE! File linked here has the correct data, but the file name is Ltri_pop08_Pi.bed.gz.) | 10.17044/scilifelab.26937202.v1 | Ltri_pop08_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 10 | Whole genome Tajima's D estimates for individuals of population 10 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26937202.v2 | Ltri_pop10_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 11 | Whole genome Tajima's D estimates for individuals of population 11 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26937202.v2 | Ltri_pop11_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 01 | Whole genome nucleotide diversity (π) estimates for individuals of population 01 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop01_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 03 | Whole genome nucleotide diversity (π) estimates for individuals of population 03 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop03_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 04 | Whole genome nucleotide diversity (π) estimates for individuals of population 04 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop04_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 06 | Whole genome nucleotide diversity (π) estimates for individuals of population 06 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop06_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 07 | Whole genome nucleotide diversity (π) estimates for individuals of population 07 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop07_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 08 | Whole genome nucleotide diversity (π) estimates for individuals of population 08 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop08_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 10 | Whole genome nucleotide diversity (π) estimates for individuals of population 10 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop10_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 11 | Whole genome nucleotide diversity (π) estimates for individuals of population 11 of L. trigynum per 100 kb windows. | 10.17044/scilifelab.26936965.v2 | Ltri_pop11_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 |
Download
Website
Article
Download the table contents as a JSON file.
Open (in a new tab) the refNameAlias text file used in JBrowse to set the aliases for reference sequence names (e.g., to define that "chr1" is an alias for "1").
Open the Glossary (in a new tab).| Data track name | Description | Links | Principal investigator | Principal investigator affiliation |
|---|---|---|---|---|
| Genome | Reference genome sequence | Tanja Slotte | Stockholm University | |
| Protein-coding genes | Functional annotation of protein-coding genes | Tanja Slotte | Stockholm University | |
| Repeats | Annotation of the repetitive regions | Tanja Slotte | Stockholm University | |
| Tajima's D, population 01 | Whole genome Tajima's D estimates for individuals of population 01 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 03 | Whole genome Tajima's D estimates for individuals of population 03 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 04 | Whole genome Tajima's D estimates for individuals of population 04 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 06 | Whole genome Tajima's D estimates for individuals of population 06 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 07 | Whole genome Tajima's D estimates for individuals of population 07 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 08 | Whole genome Tajima's D estimates for individuals of population 08 of L. trigynum per 100 kb windows. (NOTE! File linked here has the correct data, but the file name is Ltri_pop08_Pi.bed.gz.) | Tanja Slotte | Stockholm University | |
| Tajima's D, population 10 | Whole genome Tajima's D estimates for individuals of population 10 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 11 | Whole genome Tajima's D estimates for individuals of population 11 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 01 | Whole genome nucleotide diversity (π) estimates for individuals of population 01 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 03 | Whole genome nucleotide diversity (π) estimates for individuals of population 03 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 04 | Whole genome nucleotide diversity (π) estimates for individuals of population 04 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 06 | Whole genome nucleotide diversity (π) estimates for individuals of population 06 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 07 | Whole genome nucleotide diversity (π) estimates for individuals of population 07 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 08 | Whole genome nucleotide diversity (π) estimates for individuals of population 08 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 10 | Whole genome nucleotide diversity (π) estimates for individuals of population 10 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 11 | Whole genome nucleotide diversity (π) estimates for individuals of population 11 of L. trigynum per 100 kb windows. | Tanja Slotte | Stockholm University |
Page last updated: 31/10/2024