Notes: Assembly statistics were calculated for the primary genome assembly GCA_964030455.1. (GCA_964030455.1_Ltrigynum_genome_genomic.fna.gz) using Quast (v5.2.0; Mikheenko et al. 2018). Busco statistics (Manni et al., 2021) were taken from Gutiérrez-Valencia et al. (2024). Annotation statistics were calculated for Ltrigynum_v1_genes.gtf using AGAT (v1.4.1; Dainat, 2024).

BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: eukaryota_odb10). See also the official BUSCO manual.

Publication(s)

The data for Linum trigynum displayed in the genome portal comes from:

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Gutiérrez-Valencia, J., Zervakis, P.-I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., Bunikis, I., Soler, L., Hughes, P. W., Désamoré, A., Laenen, B., Abdelaziz, M., Pettersson, O. V., Arroyo, J., & Slotte, T. (2024). Genetic Causes and Genomic Consequences of Breakdown of Distyly in Linum trigynum. Molecular Biology and Evolution, 41(5), msae087. https://doi.org/10.1093/molbev/msae087

The tools used by to calculate the statistics shown on top of this page are described in:

• Dainat J. (2024). AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format. (Version v1.4.1). Zenodo. https://www.doi.org/10.5281/zenodo.3552717

• Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199

• Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D., & Gurevich, A. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics, 34(13), i142–i150. https://doi.org/10.1093/bioinformatics/bty266

Funding

The study in which the genome data was generated (Gutiérrez-Valencia et al. 2024) acknowledge funding by:

• The European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement number 757451)
• The Swedish Research Council (grant numbers 2019-04452 and 2023-04532)
• The Erik Philip-Sörensen foundation
• The Bergströms foundation
• The Nilsson-Ehle foundation
• The Carl Trygger foundation