Description
- Assembly Name: Ltrigynum_genome
- Assembly Type: Haploid
- Assembly Level: Chromosome
- Genome Representation: Full
- Accession: GCA_964030455.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 498.04 |
| GC % | 41.35 |
| Contig # | 104 |
| Contig N50 (Mbp) | 12.68 |
| Contig L50 | 12 |
| Contig N90 (Mbp) | 3.05 |
| Contig L90 | 38 |
| Scaffold # | 15 |
| Scaffold N50 (Mbp) | 47.03 |
| Scaffold L50 | 5 |
| Scaffold N90 (Mbp) | 41.58 |
| Scaffold L90 | 9 |
| Scaffolds >= 10 kb | 12 |
| BUSCO % (eukaryota_odb10) | C:95.6 [S:66.2, D:29.4], F:1.2, M:3.2, n:255 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 54671 |
| Transcript # | 80475 |
| Avg exons per transcript | 3.9 |
| Avg gene length (bp) | 3176 |
| Avg transcript length (bp) | 2705 |
| Avg exon length (bp) | 510 |
| Avg intron length (bp) | 233 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_964030455.1. Busco statistics were taken from Gutiérrez-Valencia et al. (2024). Annotation statistics were calculated using Ltrigynum_v1_genes.gtf.
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: eukaryota_odb10). See also the official BUSCO manual.
Publication(s)
The data for Linum trigynum displayed in the genome portal comes from:
-
Gutiérrez-Valencia, J., Zervakis, P.-I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., Bunikis, I., Soler, L., Hughes, P. W., Désamoré, A., Laenen, B., Abdelaziz, M., Pettersson, O. V., Arroyo, J., & Slotte, T. (2024). Genetic Causes and Genomic Consequences of Breakdown of Distyly in Linum trigynum. Molecular Biology and Evolution, 41(5), msae087. https://doi.org/10.1093/molbev/msae087
Funding
The study in which the genome data was generated (Gutiérrez-Valencia et al. 2024) acknowledge funding by:
- The European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement number 757451)
- The Swedish Research Council (grant numbers 2019-04452 and 2023-04532)
- The Erik Philip-Sörensen foundation
- The Bergströms foundation
- The Nilsson-Ehle foundation
- The Carl Trygger foundation
Page last updated: 31/10/2024