Data availability
The table below lists the data files currently displayed on the Genome Portal. In the Links column, you can find action buttons to download the data file, go to the website of the source repository from where the data was fetched, and (if applicable) the associated scientific article(s) to the data. You can use the toggle on the top right of the table to switch between the default and the expanded table view.
| Data track name | Description | Links | Accession/DOI | File name | Principal investigator | Principal investigator affiliation | First date on portal |
|---|---|---|---|---|---|---|---|
| Genome | Reference genome sequence | GCA_946122785.1 | CAMGYJ01.fasta.gz | Tanja Slotte | Stockholm University | 15 October 2024 | |
| Protein-coding genes | Functional annotation of protein-coding genes | 10.17044/scilifelab.24340378.v1 | ltenue_v1_genes.gff.zip | Tanja Slotte | Stockholm University | 15 October 2024 | |
| Repeats | Annotation of the repetitive regions | 10.17044/scilifelab.24340378.v1 | L_tenue_v1_rep.bed.gz | Tanja Slotte | Stockholm University | 15 October 2024 | |
| Tajima's D, population 06 | Whole genome Tajima's D estimates for individuals of population 06 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.v1 | Lten_pop06_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 08 | Whole genome Tajima's D estimates for individuals of population 08 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.v2 | Lten_pop08_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 17 | Whole genome Tajima's D estimates for individuals of population 17 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.v2 | Lten_pop17_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 21 | Whole genome Tajima's D estimates for individuals of population 21 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.21 | Lten_pop21_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 23 | Whole genome Tajima's D estimates for individuals of population 23 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.v2 | Lten_pop23_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 26 | Whole genome Tajima's D estimates for individuals of population 26 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.v2 | Lten_pop26_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 32 | Whole genome Tajima's D estimates for individuals of population 32 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.v2 | Lten_pop32_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Tajima's D, population 34 | Whole genome Tajima's D estimates for individuals of population 34 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937304.v2 | Lten_pop34_TD.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 06 | Whole genome nucleotide diversity (π) estimates for individuals of population 06 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop06_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 08 | Whole genome nucleotide diversity (π) estimates for individuals of population 08 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop08_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 17 | Whole genome nucleotide diversity (π) estimates for individuals of population 17 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop17_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 21 | Whole genome nucleotide diversity (π) estimates for individuals of population 21 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop21_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 23 | Whole genome nucleotide diversity (π) estimates for individuals of population 23 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop23_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 26 | Whole genome nucleotide diversity (π) estimates for individuals of population 26 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop26_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 32 | Whole genome nucleotide diversity (π) estimates for individuals of population 32 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop32_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 | |
| Nucleotide diversity (π), population 34 | Whole genome nucleotide diversity (π) estimates for individuals of population 34 of L. tenue per 100 kb windows. | 10.17044/scilifelab.26937271.v2 | Lten_pop34_Pi.bed.gz | Tanja Slotte | Stockholm University | 31 October 2024 |
Download
Website
Article
Download the table contents as a JSON file.
Open (in a new tab) the refNameAlias text file used in JBrowse to set the aliases for reference sequence names (e.g., to define that "chr1" is an alias for "1").
Open the Glossary (in a new tab).
| Data track name | Description | Links | Principal investigator | Principal investigator affiliation |
|---|---|---|---|---|
| Genome | Reference genome sequence | Tanja Slotte | Stockholm University | |
| Protein-coding genes | Functional annotation of protein-coding genes | Tanja Slotte | Stockholm University | |
| Repeats | Annotation of the repetitive regions | Tanja Slotte | Stockholm University | |
| Tajima's D, population 06 | Whole genome Tajima's D estimates for individuals of population 06 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 08 | Whole genome Tajima's D estimates for individuals of population 08 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 17 | Whole genome Tajima's D estimates for individuals of population 17 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 21 | Whole genome Tajima's D estimates for individuals of population 21 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 23 | Whole genome Tajima's D estimates for individuals of population 23 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 26 | Whole genome Tajima's D estimates for individuals of population 26 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 32 | Whole genome Tajima's D estimates for individuals of population 32 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Tajima's D, population 34 | Whole genome Tajima's D estimates for individuals of population 34 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 06 | Whole genome nucleotide diversity (π) estimates for individuals of population 06 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 08 | Whole genome nucleotide diversity (π) estimates for individuals of population 08 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 17 | Whole genome nucleotide diversity (π) estimates for individuals of population 17 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 21 | Whole genome nucleotide diversity (π) estimates for individuals of population 21 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 23 | Whole genome nucleotide diversity (π) estimates for individuals of population 23 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 26 | Whole genome nucleotide diversity (π) estimates for individuals of population 26 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 32 | Whole genome nucleotide diversity (π) estimates for individuals of population 32 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University | |
| Nucleotide diversity (π), population 34 | Whole genome nucleotide diversity (π) estimates for individuals of population 34 of L. tenue per 100 kb windows. | Tanja Slotte | Stockholm University |
Page last updated: 31/10/2024