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Genome assembly

Species

Linum tenue Desf.

A species of flax

Description

  • Assembly Name: Linum_tenue_thrum_v1
  • Assembly Type: Haploid
  • Assembly Level: Scaffold
  • Genome Representation: Full
  • Accession: GCA_946122785.1

Assembly Statistics

Statistic Value
Assembly length (Mbp) 692.36
GC % 41.64
Contig # 598
Contig N50 (Mbp) 2.06
Contig L50 110
Contig N90 (Mbp) 0.59
Contig L90 344
Scaffold # 23
Scaffold N50 (Mbp) 69.33
Scaffold L50 5
Scaffold N90 (Mbp) 53.51
Scaffold L90 9
Scaffolds >= 10 kb 17
BUSCO % (eudicots_odb10) C:94.2 [S:62.9, D:31.3], F:0.9, M:4.9, n:2326

Annotation Statistics

Statistic Value
Gene # 52831
Transcript # 142552
Avg exons per transcript 6.1
Avg gene length (bp) 3080
Avg transcript length (bp) 3305
Avg exon length (bp) 272
Avg intron length (bp) 101

Notes: Assembly statistics were calculated for the primary genome assembly GCA_946122785.1. Busco statistics were taken from Gutiérrez-Valencia et al. (2022). Annotation statistics were calculated using Ltenue_v1_genes.gff.

BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: eudicots_odb10). See also the official BUSCO manual.

Publication(s)

The data for Linum tenue displayed in the genome portal comes from:

  • Gutiérrez-Valencia, J., Fracassetti, M., Berdan, E. L., Bunikis, I., Soler, L., Dainat, J., Kutschera, V. E., Losvik, A., Désamoré, A., Hughes, P. W., Foroozani, A., Laenen, B., Pesquet, E., Abdelaziz, M., Pettersson, O. V., Nystedt, B., Brennan, A. C., Arroyo, J., & Slotte, T. (2022). Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. Current Biology, 32(20), 4360-4371.e6. https://doi.org/10.1016/j.cub.2022.08.042

Funding

The study in which the genome data was generated (Gutiérrez-Valencia et al. 2022) acknowledge funding by:

  • The European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 757451)
  • The Swedish Research Council (grant no. 2019-04452)
  • The Erik Philip-Sörensen foundation
  • The Bergströms foundation
  • The Carl Trygger foundation
  • The Knut and Alice Wallenberg Foundation as part of the National Bioinformatics Infrastructure Sweden at SciLifeLab.

Page last updated: 31/10/2024