Description
- Assembly Name: Euphydryas_editha
- Assembly Type: haploid
- Assembly Level: scaffold
- Genome Representation: full
- Accession: GCA_933666425.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 607.70 |
| GC % | 33.96 |
| Contig # | 1020 |
| Contig N50 (Mbp) | 1.67 |
| Contig L50 | 101 |
| Contig N90 (Mbp) | 0.31 |
| Contig L90 | 412 |
| Scaffold # | 142 |
| Scaffold N50 (Mbp) | 21.23 |
| Scaffold L50 | 14 |
| Scaffold N90 (Mbp) | 12.97 |
| Scaffold L90 | 27 |
| Scaffolds >= 10 kb | 93 |
| BUSCO % (lepidoptera_odb10)) | C:97.8 [S:97.8 D:0.01], F:0.003, M:0.01, n:5286 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 23193 |
| Transcript # | 26018 |
| Avg exons per transcript | 5.2 |
| Avg gene length (bp) | 6431 |
| Avg transcript length (bp) | 6873 |
| Avg exon length (bp) | 254 |
| Avg intron length (bp) | 1331 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_933666425.1 (CAKOGL01.fna.gz) using Quast (v5.2.0; Mikheenko et al. 2018). Busco statistics (Manni et al., 2021) were taken from Tunstrom et al. (2022). Annotation statistics were calculated using CA_933666425.1_Euphydryas_editha_genomic.gff.gz using AGAT (v1.4.1; Dainat, 2024).
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: arthropoda_odb10). See also the official BUSCO manual.
Publication(s)
The data for Euphydryas editha displayed in the genome portal comes from:
Tunstrom, K., Wheat, C. W., Parmesan, C., Singer, M. C., & Mikheyev, A. S. (2022). A Genome for Edith’s Checkerspot Butterfly: An Insect with Complex Host-Adaptive Suites and Rapid Evolutionary Responses to Environmental Changes. Genome Biology and Evolution, 14(8), evac113. https://doi.org/10.1093/gbe/evac113The tools used by the Genome Portal staff to calculate the statistics shown on top of this page are described in:
Dainat J. (2024). AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format. (Version v1.4.1). Zenodo. https://www.doi.org/10.5281/zenodo.3552717
Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199
Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D., & Gurevich, A. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics, 34(13), i142–i150. https://doi.org/10.1093/bioinformatics/bty266
Funding
The study in which the genome data was generated (Tunstrom et al. 2022) acknowledge funding by:
- Swedish Research Council (Grant number: 2017-04386)
- The French Make Our Planet Great Again award (Project CCISS, number ANR-17-MPGA-0007)
- The Laboratoires d’Excellences (LABEX) TULIP (ANR-10-LABX-41)
- The Science for Life Laboratory National Project on Biodiversity (2014/R2-77)
Page last updated: 05/02/2026