Description
- Assembly Name: ASM370576v3
- Assembly Type: haploid
- Assembly Level: contig
- Genome Representation: full
- Accession: GCA_003705765.3
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 13.69 |
| GC % | 48.92 |
| Contig # | 333 |
| Contig N50 (Mbp) | 0.25 |
| Contig L50 | 15 |
| Contig N90 (Mbp) | 0.07 |
| Contig L90 | 52 |
| Scaffold # | 333 |
| Scaffold N50 (Mbp) | 0.25 |
| Scaffold L50 | 15 |
| Scaffold N90 (Mbp) | 0.07 |
| Scaffold L90 | 52 |
| Scaffolds >= 10 kb | 79 |
| BUSCO % (ascomycota_odb10.2024-01-08) | C:95.3 [S:94.5 ,D:0.8], F:0.2, M:4.5, n:1706 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 6069 |
| Transcript # | 6142 |
| Avg exons per transcript | 1.4 |
| Avg gene length (bp) | 1445 |
| Avg transcript length (bp) | 1440 |
| Avg exon length (bp) | 1018 |
| Avg intron length (bp) | 98 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_003705765.3 (GCA_003705765.3_ASM370576v3_genomic.fna.gz) using Quast (v5.2.0; Mikheenko et al. 2018). Busco statistics were calculated for GCA_003705765.3_ASM370576v3_genomic.fna.gz using Busco (v5.8.3; Manni et al., 2021). Annotation statistics were calculated for bmokoenaii_annotation.gff using AGAT (v1.4.1; Dainat, 2024).
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: ascomycota_odb10). See also the official BUSCO manual.
Publication(s)
The data for Blastobotrys mokoenaii NRRL Y-27120 displayed in the genome portal comes from:
- Genome assembly:
Shen, X.-X., Opulente, D. A., Kominek, J., Zhou, X., Steenwyk, J. L., Buh, K. V., Haase, M. A. B., Wisecaver, J. H., Wang, M., Doering, D. T., Boudouris, J. T., Schneider, R. M., Langdon, Q. K., Ohkuma, M., Endoh, R., Takashima, M., Manabe, R., Čadež, N., Libkind, D., … Rokas, A. (2018). Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum. Cell, 175(6), 1533-1545.e20. https://doi.org/10.1016/j.cell.2018.10.023- Annotation of protein-coding genes:
Ravn, J.; Sörensen Ristinmaa, A.; Mazurkewich, ScotS.t; Borges Dias, G.; Larsbrink, J.; Geijer, C. (2025). Gene annotation of Blastobotrys mokoenaii, Blastobotrys illinoisensis, and Blastobotrys malaysiensis. Chalmers University of Technology. Dataset. https://doi.org/10.17044/scilifelab.28606814.v1The tools used by the Genome Portal staff to calculate the statistics shown on top of this page are described in:
Dainat J. (2024). AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format. (Version v1.4.1). Zenodo. https://www.doi.org/10.5281/zenodo.3552717
Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199
Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D., & Gurevich, A. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics, 34(13), i142–i150. https://doi.org/10.1093/bioinformatics/bty266
Funding
The annotation of protein-coding genes (Ravn et al., 2025) acknowledge funding by:
- Novo Nordisk Foundation (Grant number: NNF22OC0079899)
Page last updated: 05/05/2025