Description
- Assembly Name: BILLI_YB1343_PB
- Assembly Type: haploid
- Assembly Level: contig
- Genome Representation: full
- Accession: GCA_965113335.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 14.35 |
| GC % | 51.14 |
| Contig # | 7 |
| Contig N50 (Mbp) | 3.25 |
| Contig L50 | 2 |
| Contig N90 (Mbp) | 2.34 |
| Contig L90 | 4 |
| Scaffold # | 7 |
| Scaffold N50 (Mbp) | 3.25 |
| Scaffold L50 | 2 |
| Scaffold N90 (Mbp) | 2.34 |
| Scaffold L90 | 4 |
| Scaffolds >= 10 kb | 7 |
| BUSCO % (ascomycota_odb10.2024-01-08) | C:95.3 [S:94.7, D:0.6], F:0.5, M:4.2, n:1706 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 6177 |
| Transcript # | 6326 |
| Avg exons per transcript | 1.4 |
| Avg gene length (bp) | 1465 |
| Avg transcript length (bp) | 1462 |
| Avg exon length (bp) | 1015 |
| Avg intron length (bp) | 116 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_965113335.1. (CBCOUN01.fasta.gz) using Quast (v5.2.0; Mikheenko et al. 2018). Busco statistics were calculated for CBCOUN01.fasta.gz using Busco (v5.8.3; Manni et al., 2021). Annotation statistics were calculated for billinoisensis_annotation.gff using AGAT (v1.4.1; Dainat, 2024).
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: ascomycota_odb10). See also the official BUSCO manual.
Publication(s)
There is currently no publication associated with the genome assembly displayed in the genome portal; in the meantime, please cite it using accession number GCA_965113335.1.
The annotation data for Blastobotrys malaysiensis NRRL Y-6417 displayed in the genome portal comes from:
Ravn, J.; Sörensen Ristinmaa, A.; Mazurkewich, ScotS.t; Borges Dias, G.; Larsbrink, J.; Geijer, C. (2025). Gene annotation of Blastobotrys mokoenaii, Blastobotrys illinoisensis, and Blastobotrys malaysiensis. Chalmers University of Technology. Dataset. https://doi.org/10.17044/scilifelab.28606814.v1The tools used by the Genome Portal staff to calculate the statistics shown on top of this page are described in:
Dainat J. (2024). AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format. (Version v1.4.1). Zenodo. https://www.doi.org/10.5281/zenodo.3552717
Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199
Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D., & Gurevich, A. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics, 34(13), i142–i150. https://doi.org/10.1093/bioinformatics/bty266
Funding
The annotation of protein-coding genes (Ravn et al., 2025) acknowledge funding by:
- Novo Nordisk Foundation (Grant number: NNF22OC0079899)
Page last updated: 05/05/2025