Data availability
The table below lists the data files currently displayed on the Genome Portal. In the Links column, you can find action buttons to download the data file, go to the website of the source repository from where the data was fetched, and (if applicable) the associated scientific article(s) to the data. You can use the toggle on the top right of the table to switch between the default and the expanded table view.
| Data track name | Description | Links | Accession/DOI | File name | Principal investigator | Principal investigator affiliation | First date on portal |
|---|---|---|---|---|---|---|---|
| Genome | Reference genome sequence | GCA_963995495.1 | CAXEFM01.fasta.gz | Matthew Webster | Uppsala University | 14 January 2026 | |
| Protein-coding genes | Functional annotation of protein-coding genes in the primary genome assembly | GCA_963995495.1 | GCA_963995495.1_iyAntRet1_genomic.gff.gz | Matthew Webster | Uppsala University | 14 January 2026 | |
| Repeats | Nucleotide sequences of the predicted repetitive elements in GFF format. | 10.17044/scilifelab.30884846 | Anthophora_retusa_repeats.gff | Matthew Webster | Uppsala University | 14 January 2026 | |
| Transcripts (Isoseq) | PacBio IsoSeq transcripts aligned to the primary genome assembly using miniprot v.0.10-r226. | 10.17044/scilifelab.30884846 | Anthophora_retusa_isoseq.gff | Matthew Webster | Uppsala University | 14 January 2026 | |
| Nucleotide diversity (Pi), 5kb windows | Nucleotide diversity (π) estimated in non-overlapping 5 kb windows across each genome using variant calls generated from population sequencing data from 57 A. retusa individuals. | 10.17044/scilifelab.30884846 | retusa_5kb.windowed.pi | Matthew Webster | Uppsala University | 14 January 2026 | |
| Tajima's D, calculated with 10kb windows | Tajima’s D was calculated in sliding windows across the genome using A. retusa SNP datasets. | 10.17044/scilifelab.30884846 | retusa.Tajima.D.end_column_5kb_midpoint.bed | Matthew Webster | Uppsala University | 14 January 2026 |
Download
Website
Article
Download the table contents as a JSON file.
Open (in a new tab) the refNameAlias text file used in JBrowse to set the aliases for reference sequence names (e.g., to define that "chr1" is an alias for "1").
Open the Glossary (in a new tab).| Data track name | Description | Links | Principal investigator | Principal investigator affiliation |
|---|---|---|---|---|
| Genome | Reference genome sequence | Matthew Webster | Uppsala University | |
| Protein-coding genes | Functional annotation of protein-coding genes in the primary genome assembly | Matthew Webster | Uppsala University | |
| Repeats | Nucleotide sequences of the predicted repetitive elements in GFF format. | Matthew Webster | Uppsala University | |
| Transcripts (Isoseq) | PacBio IsoSeq transcripts aligned to the primary genome assembly using miniprot v.0.10-r226. | Matthew Webster | Uppsala University | |
| Nucleotide diversity (Pi), 5kb windows | Nucleotide diversity (π) estimated in non-overlapping 5 kb windows across each genome using variant calls generated from population sequencing data from 57 A. retusa individuals. | Matthew Webster | Uppsala University | |
| Tajima's D, calculated with 10kb windows | Tajima’s D was calculated in sliding windows across the genome using A. retusa SNP datasets. | Matthew Webster | Uppsala University |
Page last updated: 14/01/2026