Description
- Assembly Name: iyAntPlag1
- Assembly Type: haploid
- Assembly Level: contig
- Genome Representation: full
- Accession: GCA_963995485.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 325.17 |
| GC % | 36.73 |
| Contig # | 295 |
| Contig N50 (Mbp) | 17.73 |
| Contig L50 | 7 |
| Contig N90 (Mbp) | 2.45 |
| Contig L90 | 19 |
| Scaffold # | 295 |
| Scaffold N50 (Mbp) | 17.73 |
| Scaffold L50 | 7 |
| Scaffold N90 (Mbp) | 2.45 |
| Scaffold L90 | 19 |
| Scaffolds >= 10 kb | 205 |
| BUSCO % (hymenoptera_odb10) | C:95.4 [S:79.9, D:15.5], F:1.0, M:3.6, n:5991 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 11416 |
| Transcript # | 14372 |
| Avg exons per transcript | 6.2 |
| Avg gene length (bp) | 9861 |
| Avg transcript length (bp) | 9265 |
| Avg exon length (bp) | 282 |
| Avg intron length (bp) | 1343 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_963995485.1 (CAXEFL01.fasta) using Quast (v5.2.0; Mikheenko et al. 2018). Busco statistics (Manni et al., 2021) were received by communication with the authors. Annotation statistics were calculated for GCA_963995485.1_iyAntPlag1_genomic.gff using AGAT (v1.4.1; Dainat, 2024).
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: arthropoda_odb10). See also the official BUSCO manual.
Publication(s)
The data for Anthophora plagiata displayed in the genome portal comes from:
Taliadoros, D., Soares, A. E. R., Dias, G., Bunikis, I., Pippel, M., Olsson, A., Mosbech, M.-B., Heintz, J., Lager, N., Strand, A.-S., Pettersson, M., Pettersson, O. V., Lantz, H., Cederberg, B., Lindblad-Toh, K., & Webster, M. T. (2025). Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories. Molecular Ecology, n/a(n/a), e70204. https://doi.org/10.1111/mec.70204The tools used by to calculate the statistics shown on top of this page are described in:
Dainat J. (2024). AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format. (Version v1.4.1). Zenodo. https://www.doi.org/10.5281/zenodo.3552717
Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199
Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D., & Gurevich, A. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics, 34(13), i142–i150. https://doi.org/10.1093/bioinformatics/bty266
Funding
The study in which the genome data was generated (Taliadoros et al 2025) acknowledge funding by:
- Swedish Research Council; Grant number: 2020-06174_VR
- Science for Life Laboratory
- National Academic Infrastructure for Supercomputing in Sweden, SNIC 2022/5-333 and SNIC 2023/23-465.
Page last updated: 14/01/2026