Description
- Assembly Name: Afil_fr2py
- Assembly Type: Haploid
- Assembly Level: Chromosome
- Genome Representation: Full
- Accession: GCA_039555335.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 1570.73 |
| GC % | 36.67 |
| Contig # | 2057 |
| Contig N50 (Mbp) | 2.12 |
| Contig L50 | 218 |
| Contig N90 (Mbp) | 0.49 |
| Contig L90 | 761 |
| Scaffold # | 597 |
| Scaffold N50 (Mbp) | 68.86 |
| Scaffold L50 | 10 |
| Scaffold N90 (Mbp) | 60.07 |
| Scaffold L90 | 20 |
| Scaffolds >= 10 kb | 555 |
| BUSCO % (metazoa_odb10) | C:92.7 [S:86.2, D:6.5], F:5.0, M:2.3, n:954 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 30267 |
| Transcript # | 42666 |
| Avg exons per transcript | 9.8 |
| Avg gene length (bp) | 24258 |
| Avg transcript length (bp) | 30130 |
| Avg exon length (bp) | 253 |
| Avg intron length (bp) | 2978 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_039555335.1. Busco statistics were taken from Parey et al. (2024) and communication with the authors. Annotation statistics were calculated using Afil_fr2py.wn.filt.final.chroms.sorted.gtf.
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: arthropoda_odb10). See also the official BUSCO manual.
Publication(s)
The data for Amphiura filiformis displayed in the genome portal comes from:
Parey, E., Ortega-Martinez, O., Delroisse, J., Piovani, L., Czarkwiani, A., Dylus, D., Arya, S., Dupont, S., Thorndyke, M., Larsson, T., Johannesson, K., Buckley, K. M., Martinez, P., Oliveri, P., & Marlétaz, F. (2024). The brittle star genome illuminates the genetic basis of animal appendage regeneration. Nature Ecology & Evolution, 8(8), 1505–1521. https://doi.org/10.1038/s41559-024-02456-yFunding
The study in which the genome data was generated (Parey et al 2024) acknowledge funding by:
- The Centre for Marine Evolutionary Biology at the University of Gothenburg
- The IMAGO (Infrastructure for MArine Genetic model Organisms) project
Page last updated: 23/01/2025