Description
- Assembly Name: AobtHiC_assembly
- Assembly Type: haploid
- Assembly Level: scaffold
- Genome Representation: full
- Accession: GCA_963669975.1
Assembly Statistics
| Statistic | Value |
|---|---|
| Assembly length (Mbp) | 1105.07 |
| GC % | 37.46 |
| Contig # | 7275 |
| Contig N50 (Mbp) | 0.77 |
| Contig L50 | 391 |
| Contig N90 (Mbp) | 0.09 |
| Contig L90 | 1858 |
| Scaffold # | 3796 |
| Scaffold N50 (Mbp) | 108.70 |
| Scaffold L50 | 5 |
| Scaffold N90 (Mbp) | 43.14 |
| Scaffold L90 | 10 |
| Scaffolds >= 10 kb | 2532 |
| BUSCO % (insecta_odb10) | C:98.6 [S:86.6, D:12.0], F:0.4, M:1.0, n:1367 |
Annotation Statistics
| Statistic | Value |
|---|---|
| Gene # | 36607 |
| Transcript # | 66886 |
| Avg exons per transcript | 5.7 |
| Avg gene length (bp) | 12683 |
| Avg transcript length (bp) | 16560 |
| Avg exon length (bp) | 347 |
| Avg intron length (bp) | 3165 |
Notes: Assembly statistics were calculated for the primary genome assembly GCA_963669975.1 (CAVLJG01.fna.gz) using Quast (v5.2.0; Mikheenko et al. 2018). Busco statistics (Manni et al., 2021) were provided by the submitting author(s). Annotation statistics were calculated for GCA_963669975.1_AobtHiC_assembly_genomic.gff.gz using AGAT (v1.4.1; Dainat, 2024).
BUSCO notation: C: Complete; S: Single-copy; D: Duplicated; F: Fragmented; M: Missing; n: Total BUSCO genes included in the dataset (here: insecta_odb10). See also the official BUSCO manual.
Publication(s)
The data for Acanthoscelides obtectus displayed in the genome portal comes from:
Toros, A., Pettersson, M. E., Fuentes-Pardo, A. P., Rêgo, A., Rubin, C.-J., Sayadi, A., Đorđević, M., Savković, U., Stojković, B., Immonen, E., Kucka, M., Chan, Y. F., Andersson, L., & Arnqvist, G. (in submission). Experimental evolution unveils a role for structural variants and sex-specificity in the genetic architecture of lifespan.Immonen, E., Sayadi, A., Stojković, B., Savković, U., Đorđević, M., Liljestrand-Rönn, J., Wiberg, R. A. W., & Arnqvist, G. (2023). Experimental life history evolution results in sex-specific evolution of gene expression in seed beetles. Genome Biology and Evolution, 15(1), evac177. https://doi.org/10.1093/gbe/evac177The tools used to calculate the statistics shown on top of this page are described in:
Dainat J. (2024). AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format. (Version v1.4.1). Zenodo. https://www.doi.org/10.5281/zenodo.3552717
Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199
Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D., & Gurevich, A. (2018). Versatile genome assembly evaluation with QUAST-LG. Bioinformatics, 34(13), i142–i150. https://doi.org/10.1093/bioinformatics/bty266
Funding
The study in which the genome data was generated (Toros et al., in submission) acknowledge funding by:
- Swedish Research Council 2019-03611
- Swedish Research Council 2023-03730
- Swedish Research Council 2017-02907
- Knut and Alice Wallenberg Foundation KAW 2023.0160
Page last updated: 13/10/2026